\documentclass[a4paper]{book}
\usepackage{makeidx}
\usepackage{graphicx}
\usepackage{multicol}
\usepackage{float}
\usepackage{listings}
\usepackage{color}
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\usepackage[utf8]{inputenc}
\usepackage{mathptmx}
\usepackage[scaled=.90]{helvet}
\usepackage{courier}
\usepackage{doxygen}
\usepackage[numbered]{mcode}
\lstset{language=matlab,frame=trBL,breaklines=true}
%\lstset{language=C++,inputencoding=utf8,basicstyle=\footnotesize,breaklines=true,breakatwhitespace=true,tabsize=8,numbers=left }
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\begin{document}
\hypersetup{pageanchor=false}
\title{Direct Fourier Reconstruction\\
Reference Manual\footnote{Generated by Doxygen 1.7.3: Sun May 1 2011 11:02:42}}
\author{Antony, Celine, Lewis, Samson, and Steven}
\date{}
\maketitle
\clearemptydoublepage
\pagenumbering{roman}
\tableofcontents
\clearemptydoublepage
\pagenumbering{arabic}
\hypersetup{pageanchor=true}
\chapter{CentralSlice}
\label{index}\hypertarget{index}{}\input{index}
\chapter{File Index}
\input{files}
\chapter{File Documentation}
\input{add__noise_8m}
\input{add__noise_8m_source}
\input{apply__fft1_8m}
\input{apply__fft1_8m_source}
\input{damage__sensors_8m}
\input{damage__sensors_8m_source}
\input{image__crop_8m}
\input{image__crop_8m_source}
\input{inverse__Fourier__2D_8m}
\input{inverse__Fourier__2D_8m_source}
\input{main_8m}
\input{main_8m_source}
\input{make__phantom_8m}
\input{make__phantom_8m_source}
\input{polar__to__rect_8m}
\input{polar__to__rect_8m_source}
\input{save__image_8m}
\input{save__image_8m_source}
\input{start__simulation_8m}
\input{start__simulation_8m_source}
\input{zeropad_8m}
\input{zeropad_8m_source}
\chapter{Example Documentation}
\input{start_simulation_8m-example}
\printindex
\end{document}
